It was definitively scanning, saw this both in the dashboard and resource monitor (100MB/s scanning of DR1)
Which setting do you mean exactly.
Anyway, an update on the time everything took.
- Disabling duplication on the biggest directory (2972GB) to allow the 2 TB to be removed: 2 hours
- Removing the 2TB disk (which had about 1TB of data left): 7 hours
- Re-enabling duplication on the directory to duplicate it to the 4TB: 7,5 hours
Specs of the server:
Dual Core Pentium Core2Duo E2220 (2,4GHz)
2GB of RAM
128GB Crucial M4 SSD (bootdisk)
1x Toshiba 3TB 7200 rpm
2x Hitachi 4TB 5900 rpm
The 2 TB disk was a 5400 rpm Samsung disk