Ah that's a shame. I was always under the impression that an HBA in IT mode would pass all control of the drives to the OS, including power management, is that not correct?
I remember I have an older Fujitsu (D2616) somewhere where I did get spindown working, but not in JBOD mode so every drive has to be configured as a raid 0, which is annoying. Yes I've tried that option, didn't work unfortunately. Although I have now come to realise that since the drives are SAS, they don't report SMART, so I guess that Problem is solved.
The Motherboard I'm using also has an Intel SAS controller which I unfortunately cannot test with Scanner as it is locked to SATA mode without a key
So now my requirements are pretty much down to being able to use the Disk Control options in Scanner. I'll experiment a bit more and if I can find a combination/configuration that works I will post it here.